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pwiz::analysis::ChromatogramList_LockmassRefiner Class Reference

ChromatogramList implementation to replace peak profiles with picked peaks. More...

#include <ChromatogramList_LockmassRefiner.hpp>

Inheritance diagram for pwiz::analysis::ChromatogramList_LockmassRefiner:
pwiz::analysis::ChromatogramListWrapper pwiz::msdata::ChromatogramList

Public Member Functions

 ChromatogramList_LockmassRefiner (const msdata::ChromatogramListPtr &inner, double lockmassMzPosScans, double lockmassMzNegScans, double lockmassTolerance)
 
virtual msdata::ChromatogramPtr chromatogram (size_t index, bool getBinaryData=false) const
 retrieve a chromatogram by index More...
 
- Public Member Functions inherited from pwiz::analysis::ChromatogramListWrapper
 ChromatogramListWrapper (const msdata::ChromatogramListPtr &inner)
 
virtual size_t size () const
 returns the number of chromatograms More...
 
virtual bool empty () const
 
virtual const msdata::ChromatogramIdentitychromatogramIdentity (size_t index) const
 access to a chromatogram index More...
 
virtual size_t find (const std::string &id) const
 find id in the chromatogram index (returns size() on failure) More...
 
virtual const boost::shared_ptr< const msdata::DataProcessingdataProcessingPtr () const
 returns the data processing affecting spectra retrieved through this interface More...
 
- Public Member Functions inherited from pwiz::msdata::ChromatogramList
bool empty () const
 returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL) More...
 
virtual ~ChromatogramList ()
 

Static Public Member Functions

static bool accept (const msdata::ChromatogramListPtr &inner)
 
- Static Public Member Functions inherited from pwiz::analysis::ChromatogramListWrapper
static bool accept (const msdata::ChromatogramListPtr &inner)
 

Private Attributes

double mzPositiveScans_
 
double mzNegativeScans_
 
double tolerance_
 

Additional Inherited Members

- Protected Attributes inherited from pwiz::analysis::ChromatogramListWrapper
msdata::ChromatogramListPtr inner_
 
msdata::DataProcessingPtr dp_
 

Detailed Description

ChromatogramList implementation to replace peak profiles with picked peaks.

Definition at line 36 of file ChromatogramList_LockmassRefiner.hpp.

Constructor & Destructor Documentation

◆ ChromatogramList_LockmassRefiner()

pwiz::analysis::ChromatogramList_LockmassRefiner::ChromatogramList_LockmassRefiner ( const msdata::ChromatogramListPtr inner,
double  lockmassMzPosScans,
double  lockmassMzNegScans,
double  lockmassTolerance 
)

Member Function Documentation

◆ accept()

static bool pwiz::analysis::ChromatogramList_LockmassRefiner::accept ( const msdata::ChromatogramListPtr inner)
static

◆ chromatogram()

virtual msdata::ChromatogramPtr pwiz::analysis::ChromatogramList_LockmassRefiner::chromatogram ( size_t  index,
bool  getBinaryData = false 
) const
virtual

retrieve a chromatogram by index

  • binary data arrays will be provided if (getBinaryData == true);
  • client may assume the underlying Chromatogram* is valid

Reimplemented from pwiz::analysis::ChromatogramListWrapper.

Member Data Documentation

◆ mzPositiveScans_

double pwiz::analysis::ChromatogramList_LockmassRefiner::mzPositiveScans_
private

Definition at line 48 of file ChromatogramList_LockmassRefiner.hpp.

◆ mzNegativeScans_

double pwiz::analysis::ChromatogramList_LockmassRefiner::mzNegativeScans_
private

Definition at line 48 of file ChromatogramList_LockmassRefiner.hpp.

◆ tolerance_

double pwiz::analysis::ChromatogramList_LockmassRefiner::tolerance_
private

Definition at line 48 of file ChromatogramList_LockmassRefiner.hpp.


The documentation for this class was generated from the following file: