1
2
3 from __future__ import print_function
4
5 """GNUmed patient objects.
6
7 This is a patient object intended to let a useful client-side
8 API crystallize from actual use in true XP fashion.
9 """
10
11 __author__ = "K.Hilbert <Karsten.Hilbert@gmx.net>"
12 __license__ = "GPL"
13
14
15 import sys
16 import os.path
17 import time
18 import re as regex
19 import datetime as pyDT
20 import threading
21 import logging
22 import io
23 import inspect
24 from xml.etree import ElementTree as etree
25
26
27
28 if __name__ == '__main__':
29 logging.basicConfig(level = logging.DEBUG)
30 sys.path.insert(0, '../../')
31 from Gnumed.pycommon import gmExceptions
32 from Gnumed.pycommon import gmDispatcher
33 from Gnumed.pycommon import gmBorg
34 from Gnumed.pycommon import gmI18N
35 if __name__ == '__main__':
36 gmI18N.activate_locale()
37 gmI18N.install_domain()
38 from Gnumed.pycommon import gmNull
39 from Gnumed.pycommon import gmBusinessDBObject
40 from Gnumed.pycommon import gmTools
41 from Gnumed.pycommon import gmPG2
42 from Gnumed.pycommon import gmDateTime
43 from Gnumed.pycommon import gmMatchProvider
44 from Gnumed.pycommon import gmLog2
45 from Gnumed.pycommon import gmHooks
46
47 from Gnumed.business import gmDemographicRecord
48 from Gnumed.business import gmClinicalRecord
49 from Gnumed.business import gmXdtMappings
50 from Gnumed.business import gmProviderInbox
51 from Gnumed.business import gmExportArea
52 from Gnumed.business import gmBilling
53 from Gnumed.business import gmAutoHints
54 from Gnumed.business.gmDocuments import cDocumentFolder
55
56
57 _log = logging.getLogger('gm.person')
58
59 __gender_list = None
60 __gender_idx = None
61
62 __gender2salutation_map = None
63 __gender2string_map = None
64
65
66 _MERGE_SCRIPT_HEADER = """-- GNUmed patient merge script
67 -- created: %(date)s
68 -- patient to keep : #%(pat2keep)s
69 -- patient to merge: #%(pat2del)s
70 --
71 -- You can EASILY cause mangled data by uncritically applying this script, so ...
72 -- ... BE POSITIVELY SURE YOU UNDERSTAND THE FULL EXTENT OF WHAT IT DOES !
73
74
75 --set default_transaction_read_only to off;
76
77 BEGIN;
78 """
79
80
82 cmd = 'SELECT COUNT(1) FROM dem.lnk_identity2ext_id WHERE fk_origin = %(issuer)s AND external_id = %(val)s'
83 args = {'issuer': pk_issuer, 'val': value}
84 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
85 return rows[0][0]
86
87
89 args = {
90 'last': lastnames,
91 'dob': dob
92 }
93 where_parts = [
94 "lastnames = %(last)s",
95 "dem.date_trunc_utc('day', dob) = dem.date_trunc_utc('day', %(dob)s)"
96 ]
97 if firstnames is not None:
98 if firstnames.strip() != '':
99
100 where_parts.append("firstnames ~* %(first)s")
101 args['first'] = '\\m' + firstnames
102 if active_only:
103 cmd = """SELECT COUNT(1) FROM dem.v_active_persons WHERE %s""" % ' AND '.join(where_parts)
104 else:
105 cmd = """SELECT COUNT(1) FROM dem.v_all_persons WHERE %s""" % ' AND '.join(where_parts)
106 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
107 return rows[0][0]
108
109
111
112
113 if comment is not None:
114 comment = comment.strip()
115 if comment == u'':
116 comment = None
117 args = {
118 'last': lastnames.strip(),
119 'first': firstnames.strip(),
120 'dob': dob,
121 'cmt': comment
122 }
123 where_parts = [
124 u'lower(lastnames) = lower(%(last)s)',
125 u'lower(firstnames) = lower(%(first)s)',
126 u"dem.date_trunc_utc('day', dob) IS NOT DISTINCT FROM dem.date_trunc_utc('day', %(dob)s)",
127 u'lower(comment) IS NOT DISTINCT FROM lower(%(cmt)s)'
128 ]
129 cmd = u"SELECT COUNT(1) FROM dem.v_persons WHERE %s" % u' AND '.join(where_parts)
130 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
131 return rows[0][0]
132
133
134
136
138 self.identity = None
139 self.external_ids = []
140 self.comm_channels = []
141 self.addresses = []
142
143 self.firstnames = None
144 self.lastnames = None
145 self.title = None
146 self.gender = None
147 self.dob = None
148 self.dob_is_estimated = False
149 self.source = self.__class__.__name__
150
151 self.dob_formats = None
152 self.dob_tz = None
153
154
155
156
158 return 'firstnames lastnames dob gender title'.split()
159
162
164 where_snippets = [
165 'firstnames = %(first)s',
166 'lastnames = %(last)s'
167 ]
168 args = {
169 'first': self.firstnames,
170 'last': self.lastnames
171 }
172 if self.dob is not None:
173 where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
174 args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)
175 if self.gender is not None:
176 where_snippets.append('gender = %(sex)s')
177 args['sex'] = self.gender
178 cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets)
179 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
180
181 return rows[0][0] == 1
182
183 is_unique = property(_is_unique)
184
185
187 where_snippets = [
188 'firstnames = %(first)s',
189 'lastnames = %(last)s'
190 ]
191 args = {
192 'first': self.firstnames,
193 'last': self.lastnames
194 }
195 if self.dob is not None:
196 where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
197 args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)
198 if self.gender is not None:
199 where_snippets.append('gender = %(sex)s')
200 args['sex'] = self.gender
201 cmd = 'SELECT count(1) FROM dem.v_person_names WHERE %s' % ' AND '.join(where_snippets)
202 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
203
204 return rows[0][0] > 0
205
206 exists = property(_exists)
207
208
210 """Generate generic queries.
211
212 - not locale dependant
213 - data -> firstnames, lastnames, dob, gender
214
215 shall we mogrify name parts ? probably not as external
216 sources should know what they do
217
218 finds by inactive name, too, but then shows
219 the corresponding active name ;-)
220
221 Returns list of matching identities (may be empty)
222 or None if it was told to create an identity but couldn't.
223 """
224 where_snippets = []
225 args = {}
226
227 where_snippets.append('lower(firstnames) = lower(%(first)s)')
228 args['first'] = self.firstnames
229
230 where_snippets.append('lower(lastnames) = lower(%(last)s)')
231 args['last'] = self.lastnames
232
233 if self.dob is not None:
234 where_snippets.append("dem.date_trunc_utc('day'::text, dob) = dem.date_trunc_utc('day'::text, %(dob)s)")
235 args['dob'] = self.dob.replace(hour = 23, minute = 59, second = 59)
236
237 if self.gender is not None:
238 where_snippets.append('lower(gender) = lower(%(sex)s)')
239 args['sex'] = self.gender
240
241
242 cmd = """
243 SELECT *, '%s' AS match_type
244 FROM dem.v_active_persons
245 WHERE
246 pk_identity IN (
247 SELECT pk_identity FROM dem.v_person_names WHERE %s
248 )
249 ORDER BY lastnames, firstnames, dob""" % (
250 _('external patient source (name, gender, date of birth)'),
251 ' AND '.join(where_snippets)
252 )
253
254 try:
255 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx=True)
256 except:
257 _log.error('cannot get candidate identities for dto "%s"' % self)
258 _log.exception('query %s' % cmd)
259 rows = []
260
261 if len(rows) == 0:
262 _log.debug('no candidate identity matches found')
263 if not can_create:
264 return []
265 ident = self.import_into_database()
266 if ident is None:
267 return None
268 identities = [ident]
269 else:
270 identities = [ cPerson(row = {'pk_field': 'pk_identity', 'data': row, 'idx': idx}) for row in rows ]
271
272 return identities
273
275 """Imports self into the database."""
276
277 self.identity = create_identity (
278 firstnames = self.firstnames,
279 lastnames = self.lastnames,
280 gender = self.gender,
281 dob = self.dob
282 )
283
284 if self.identity is None:
285 return None
286
287 self.identity['dob_is_estimated'] = self.dob_is_estimated is True
288 if self.title is not None:
289 self.identity['title'] = self.title
290 self.identity.save()
291
292 for ext_id in self.external_ids:
293 try:
294 self.identity.add_external_id (
295 type_name = ext_id['name'],
296 value = ext_id['value'],
297 issuer = ext_id['issuer'],
298 comment = ext_id['comment']
299 )
300 except Exception:
301 _log.exception('cannot import <external ID> from external data source')
302 gmLog2.log_stack_trace()
303
304 for comm in self.comm_channels:
305 try:
306 self.identity.link_comm_channel (
307 comm_medium = comm['channel'],
308 url = comm['url']
309 )
310 except Exception:
311 _log.exception('cannot import <comm channel> from external data source')
312 gmLog2.log_stack_trace()
313
314 for adr in self.addresses:
315 try:
316 self.identity.link_address (
317 adr_type = adr['type'],
318 number = adr['number'],
319 subunit = adr['subunit'],
320 street = adr['street'],
321 postcode = adr['zip'],
322 urb = adr['urb'],
323 region_code = adr['region_code'],
324 country_code = adr['country_code']
325 )
326 except Exception:
327 _log.exception('cannot import <address> from external data source')
328 gmLog2.log_stack_trace()
329
330 return self.identity
331
334
336 value = value.strip()
337 if value == '':
338 return
339 name = name.strip()
340 if name == '':
341 raise ValueError(_('<name> cannot be empty'))
342 issuer = issuer.strip()
343 if issuer == '':
344 raise ValueError(_('<issuer> cannot be empty'))
345 self.external_ids.append({'name': name, 'value': value, 'issuer': issuer, 'comment': comment})
346
348 url = url.strip()
349 if url == '':
350 return
351 channel = channel.strip()
352 if channel == '':
353 raise ValueError(_('<channel> cannot be empty'))
354 self.comm_channels.append({'channel': channel, 'url': url})
355
356 - def remember_address(self, number=None, street=None, urb=None, region_code=None, zip=None, country_code=None, adr_type=None, subunit=None):
357 number = number.strip()
358 if number == '':
359 raise ValueError(_('<number> cannot be empty'))
360 street = street.strip()
361 if street == '':
362 raise ValueError(_('<street> cannot be empty'))
363 urb = urb.strip()
364 if urb == '':
365 raise ValueError(_('<urb> cannot be empty'))
366 zip = zip.strip()
367 if zip == '':
368 raise ValueError(_('<zip> cannot be empty'))
369 country_code = country_code.strip()
370 if country_code == '':
371 raise ValueError(_('<country_code> cannot be empty'))
372 if region_code is not None:
373 region_code = region_code.strip()
374 if region_code in [None, '']:
375 region_code = '??'
376 self.addresses.append ({
377 'type': adr_type,
378 'number': number,
379 'subunit': subunit,
380 'street': street,
381 'zip': zip,
382 'urb': urb,
383 'region_code': region_code,
384 'country_code': country_code
385 })
386
387
388
390 return '<%s (%s) @ %s: %s %s (%s) %s%s>' % (
391 self.__class__.__name__,
392 self.source,
393 id(self),
394 self.lastnames.upper(),
395 self.firstnames,
396 self.gender,
397 gmTools.bool2subst(self.dob_is_estimated, '~', '', ''),
398 self.dob
399 )
400
402 """Do some sanity checks on self.* access."""
403
404 if attr == 'gender':
405 if val is None:
406 object.__setattr__(self, attr, val)
407 return
408 glist, idx = get_gender_list()
409 for gender in glist:
410 if str(val) in [gender[0], gender[1], gender[2], gender[3]]:
411 val = gender[idx['tag']]
412 object.__setattr__(self, attr, val)
413 return
414 raise ValueError('invalid gender: [%s]' % val)
415
416 if attr == 'dob':
417 if val is not None:
418 if isinstance(val, str):
419 dob = self.__parse_dob_str(val)
420 if dob is None:
421 raise ValueError('cannot parse DOB [%s]' % val)
422 val = dob
423 if not isinstance(val, pyDT.datetime):
424 raise TypeError('invalid type for DOB (must be datetime.datetime): %s [%s]' % (type(val), val))
425 if val.tzinfo is None:
426 raise ValueError('datetime.datetime instance is lacking a time zone: [%s]' % val.isoformat())
427
428 object.__setattr__(self, attr, val)
429 return
430
432 return getattr(self, attr)
433
435 if self.dob_formats is None:
436 return None
437 for dob_format in self.dob_formats:
438 try:
439 dob = pyDT.datetime.strptime(dob_str, dob_format)
440 except ValueError:
441 _log.exception('cannot parse DOB [%s] with [%s]', dob_str, dob_format)
442 continue
443 if self.dob_tz is None:
444 raise ValueError('lacking TZ information in DOB [%s] and/or format [%s]' % (dob_str, self.dob_format))
445 dob = dob.replace(tzinfo = self.dob_tz)
446 return dob
447 return None
448
449
450 -class cPersonName(gmBusinessDBObject.cBusinessDBObject):
451 _cmd_fetch_payload = "SELECT * FROM dem.v_person_names WHERE pk_name = %s"
452 _cmds_store_payload = [
453 """UPDATE dem.names SET
454 active = FALSE
455 WHERE
456 %(active_name)s IS TRUE -- act only when needed and only
457 AND
458 id_identity = %(pk_identity)s -- on names of this identity
459 AND
460 active IS TRUE -- which are active
461 AND
462 id != %(pk_name)s -- but NOT *this* name
463 """,
464 """update dem.names set
465 active = %(active_name)s,
466 preferred = %(preferred)s,
467 comment = %(comment)s
468 where
469 id = %(pk_name)s and
470 id_identity = %(pk_identity)s and -- belt and suspenders
471 xmin = %(xmin_name)s""",
472 """select xmin as xmin_name from dem.names where id = %(pk_name)s"""
473 ]
474 _updatable_fields = ['active_name', 'preferred', 'comment']
475
484
486 return '%(last)s, %(title)s %(first)s%(nick)s' % {
487 'last': self._payload[self._idx['lastnames']],
488 'title': gmTools.coalesce (
489 self._payload[self._idx['title']],
490 map_gender2salutation(self._payload[self._idx['gender']])
491 ),
492 'first': self._payload[self._idx['firstnames']],
493 'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'", '%s')
494 }
495
496 description = property(_get_description, lambda x:x)
497
498
499 _SQL_get_active_person = "SELECT * FROM dem.v_active_persons WHERE pk_identity = %s"
500 _SQL_get_any_person = "SELECT * FROM dem.v_all_persons WHERE pk_identity = %s"
501
502 -class cPerson(gmBusinessDBObject.cBusinessDBObject):
503 _cmd_fetch_payload = _SQL_get_any_person
504 _cmds_store_payload = [
505 """UPDATE dem.identity SET
506 gender = %(gender)s,
507 dob = %(dob)s,
508 dob_is_estimated = %(dob_is_estimated)s,
509 tob = %(tob)s,
510 title = gm.nullify_empty_string(%(title)s),
511 fk_marital_status = %(pk_marital_status)s,
512 deceased = %(deceased)s,
513 emergency_contact = gm.nullify_empty_string(%(emergency_contact)s),
514 fk_emergency_contact = %(pk_emergency_contact)s,
515 fk_primary_provider = %(pk_primary_provider)s,
516 comment = gm.nullify_empty_string(%(comment)s)
517 WHERE
518 pk = %(pk_identity)s and
519 xmin = %(xmin_identity)s
520 RETURNING
521 xmin AS xmin_identity"""
522 ]
523 _updatable_fields = [
524 "title",
525 "dob",
526 "tob",
527 "gender",
528 "pk_marital_status",
529 'deceased',
530 'emergency_contact',
531 'pk_emergency_contact',
532 'pk_primary_provider',
533 'comment',
534 'dob_is_estimated'
535 ]
536
538 return self._payload[self._idx['pk_identity']]
540 raise AttributeError('setting ID of identity is not allowed')
541
542 ID = property(_get_ID, _set_ID)
543
544
546
547 if attribute == 'dob':
548 if value is not None:
549
550 if isinstance(value, pyDT.datetime):
551 if value.tzinfo is None:
552 raise ValueError('datetime.datetime instance is lacking a time zone: [%s]' % dt.isoformat())
553 else:
554 raise TypeError('[%s]: type [%s] (%s) invalid for attribute [dob], must be datetime.datetime or None' % (self.__class__.__name__, type(value), value))
555
556
557 if self._payload[self._idx['dob']] is not None:
558 old_dob = gmDateTime.pydt_strftime (
559 self._payload[self._idx['dob']],
560 format = '%Y %m %d %H %M %S',
561 accuracy = gmDateTime.acc_seconds
562 )
563 new_dob = gmDateTime.pydt_strftime (
564 value,
565 format = '%Y %m %d %H %M %S',
566 accuracy = gmDateTime.acc_seconds
567 )
568 if new_dob == old_dob:
569 return
570
571 gmBusinessDBObject.cBusinessDBObject.__setitem__(self, attribute, value)
572
573
576
577
580
585
586 is_patient = property(_get_is_patient, _set_is_patient)
587
588
590 return cPatient(self._payload[self._idx['pk_identity']])
591
592 as_patient = property(_get_as_patient, lambda x:x)
593
594
596 cmd = "SELECT pk FROM dem.staff WHERE fk_identity = %(pk)s"
597 args = {'pk': self._payload[self._idx['pk_identity']]}
598 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
599 if len(rows) == 0:
600 return None
601 return rows[0][0]
602
603 staff_id = property(_get_staff_id, lambda x:x)
604
605
606
607
610
611 gender_symbol = property(_get_gender_symbol, lambda x:x)
612
615
616 gender_string = property(_get_gender_string, lambda x:x)
617
621
622 gender_list = property(_get_gender_list, lambda x:x)
623
625 names = self.get_names(active_only = True)
626 if len(names) == 0:
627 _log.error('cannot retrieve active name for patient [%s]', self._payload[self._idx['pk_identity']])
628 return None
629 return names[0]
630
631 active_name = property(get_active_name, lambda x:x)
632
633 - def get_names(self, active_only=False, exclude_active=False):
634
635 args = {'pk_pat': self._payload[self._idx['pk_identity']]}
636 where_parts = ['pk_identity = %(pk_pat)s']
637 if active_only:
638 where_parts.append('active_name is True')
639 if exclude_active:
640 where_parts.append('active_name is False')
641 cmd = """
642 SELECT *
643 FROM dem.v_person_names
644 WHERE %s
645 ORDER BY active_name DESC, lastnames, firstnames
646 """ % ' AND '.join(where_parts)
647 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
648
649 if len(rows) == 0:
650
651 return []
652
653 names = [ cPersonName(row = {'idx': idx, 'data': r, 'pk_field': 'pk_name'}) for r in rows ]
654 return names
655
657 if with_nickname:
658 template = _('%(last)s,%(title)s %(first)s%(nick)s (%(sex)s)')
659 else:
660 template = _('%(last)s,%(title)s %(first)s (%(sex)s)')
661 return template % {
662 'last': self._payload[self._idx['lastnames']],
663 'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'),
664 'first': self._payload[self._idx['firstnames']],
665 'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'"),
666 'sex': self.gender_symbol
667 }
668
669
671 if with_nickname:
672 template = _('%(last)s,%(title)s %(first)s%(nick)s')
673 else:
674 template = _('%(last)s,%(title)s %(first)s')
675 return template % {
676 'last': self._payload[self._idx['lastnames']],
677 'title': gmTools.coalesce(self._payload[self._idx['title']], '', ' %s'),
678 'first': self._payload[self._idx['firstnames']],
679 'nick': gmTools.coalesce(self._payload[self._idx['preferred']], '', " '%s'")
680 }
681
682
683 - def add_name(self, firstnames, lastnames, active=True):
684 """Add a name.
685
686 @param firstnames The first names.
687 @param lastnames The last names.
688 @param active When True, the new name will become the active one (hence setting other names to inactive)
689 @type active A bool instance
690 """
691 name = create_name(self.ID, firstnames, lastnames, active)
692 if active:
693 self.refetch_payload()
694 return name
695
696
698 cmd = "delete from dem.names where id = %(name)s and id_identity = %(pat)s"
699 args = {'name': name['pk_name'], 'pat': self.ID}
700 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
701
702
703
704
705
707 """
708 Set the nickname. Setting the nickname only makes sense for the currently
709 active name.
710 @param nickname The preferred/nick/warrior name to set.
711 """
712 if self._payload[self._idx['preferred']] == nickname:
713 return True
714 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': "SELECT dem.set_nickname(%s, %s)", 'args': [self.ID, nickname]}])
715
716
717
718
719 self._payload[self._idx['preferred']] = nickname
720
721 return True
722
723
734
735 tags = property(get_tags, lambda x:x)
736
737
739 args = {
740 'tag': tag,
741 'identity': self.ID
742 }
743
744
745 cmd = "SELECT pk FROM dem.identity_tag WHERE fk_tag = %(tag)s AND fk_identity = %(identity)s"
746 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
747 if len(rows) > 0:
748 return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk'])
749
750
751 cmd = """
752 INSERT INTO dem.identity_tag (
753 fk_tag,
754 fk_identity
755 ) VALUES (
756 %(tag)s,
757 %(identity)s
758 )
759 RETURNING pk
760 """
761 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True, get_col_idx = False)
762 return gmDemographicRecord.cPersonTag(aPK_obj = rows[0]['pk'])
763
764
766 cmd = "DELETE FROM dem.identity_tag WHERE pk = %(pk)s"
767 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': {'pk': tag}}])
768
769
770
771
772
773
774
775
776
777
778
779 - def add_external_id(self, type_name=None, value=None, issuer=None, comment=None, pk_type=None):
780 """Adds an external ID to the patient.
781
782 creates ID type if necessary
783 """
784
785 if pk_type is not None:
786 cmd = """
787 select * from dem.v_external_ids4identity where
788 pk_identity = %(pat)s and
789 pk_type = %(pk_type)s and
790 value = %(val)s"""
791 else:
792
793 if issuer is None:
794 cmd = """
795 select * from dem.v_external_ids4identity where
796 pk_identity = %(pat)s and
797 name = %(name)s and
798 value = %(val)s"""
799 else:
800 cmd = """
801 select * from dem.v_external_ids4identity where
802 pk_identity = %(pat)s and
803 name = %(name)s and
804 value = %(val)s and
805 issuer = %(issuer)s"""
806 args = {
807 'pat': self.ID,
808 'name': type_name,
809 'val': value,
810 'issuer': issuer,
811 'pk_type': pk_type
812 }
813 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
814
815
816 if len(rows) == 0:
817
818 args = {
819 'pat': self.ID,
820 'val': value,
821 'type_name': type_name,
822 'pk_type': pk_type,
823 'issuer': issuer,
824 'comment': comment
825 }
826
827 if pk_type is None:
828 cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values (
829 %(val)s,
830 (select dem.add_external_id_type(%(type_name)s, %(issuer)s)),
831 %(comment)s,
832 %(pat)s
833 )"""
834 else:
835 cmd = """insert into dem.lnk_identity2ext_id (external_id, fk_origin, comment, id_identity) values (
836 %(val)s,
837 %(pk_type)s,
838 %(comment)s,
839 %(pat)s
840 )"""
841
842 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
843
844
845 else:
846 row = rows[0]
847 if comment is not None:
848
849 if gmTools.coalesce(row['comment'], '').find(comment.strip()) == -1:
850 comment = '%s%s' % (gmTools.coalesce(row['comment'], '', '%s // '), comment.strip)
851 cmd = "update dem.lnk_identity2ext_id set comment = %(comment)s where id=%(pk)s"
852 args = {'comment': comment, 'pk': row['pk_id']}
853 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
854
855
856 - def update_external_id(self, pk_id=None, type=None, value=None, issuer=None, comment=None):
857 """Edits an existing external ID.
858
859 Creates ID type if necessary.
860 """
861 cmd = """
862 UPDATE dem.lnk_identity2ext_id SET
863 fk_origin = (SELECT dem.add_external_id_type(%(type)s, %(issuer)s)),
864 external_id = %(value)s,
865 comment = gm.nullify_empty_string(%(comment)s)
866 WHERE
867 id = %(pk)s
868 """
869 args = {'pk': pk_id, 'value': value, 'type': type, 'issuer': issuer, 'comment': comment}
870 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
871
872
874 where_parts = ['pk_identity = %(pat)s']
875 args = {'pat': self.ID}
876
877 if id_type is not None:
878 where_parts.append('name = %(name)s')
879 args['name'] = id_type.strip()
880
881 if issuer is not None:
882 where_parts.append('issuer = %(issuer)s')
883 args['issuer'] = issuer.strip()
884
885 cmd = "SELECT * FROM dem.v_external_ids4identity WHERE %s" % ' AND '.join(where_parts)
886 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
887
888 return rows
889
890 external_ids = property(get_external_ids, lambda x:x)
891
892
894 cmd = """
895 DELETE FROM dem.lnk_identity2ext_id
896 WHERE id_identity = %(pat)s AND id = %(pk)s"""
897 args = {'pat': self.ID, 'pk': pk_ext_id}
898 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
899
900
902 name = self.active_name
903 last = ' '.join(p for p in name['lastnames'].split("-"))
904 last = ' '.join(p for p in last.split("."))
905 last = ' '.join(p for p in last.split("'"))
906 last = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in last.split(' '))
907 first = ' '.join(p for p in name['firstnames'].split("-"))
908 first = ' '.join(p for p in first.split("."))
909 first = ' '.join(p for p in first.split("'"))
910 first = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in first.split(' '))
911 suggestion = 'GMd-%s%s%s%s%s' % (
912 gmTools.coalesce(target, '', '%s-'),
913 last,
914 first,
915 self.get_formatted_dob(format = '-%Y%m%d', none_string = ''),
916 gmTools.coalesce(self['gender'], '', '-%s')
917 )
918 try:
919 import unidecode
920 return unidecode.unidecode(suggestion)
921 except ImportError:
922 _log.debug('cannot transliterate external ID suggestion, <unidecode> module not installed')
923 if encoding is None:
924 return suggestion
925 return suggestion.encode(encoding)
926
927 external_id_suggestion = property(suggest_external_id, lambda x:x)
928
929
931 names2use = [self.active_name]
932 names2use.extend(self.get_names(active_only = False, exclude_active = True))
933 target = gmTools.coalesce(target, '', '%s-')
934 dob = self.get_formatted_dob(format = '-%Y%m%d', none_string = '')
935 gender = gmTools.coalesce(self['gender'], '', '-%s')
936 suggestions = []
937 for name in names2use:
938 last = ' '.join(p for p in name['lastnames'].split("-"))
939 last = ' '.join(p for p in last.split("."))
940 last = ' '.join(p for p in last.split("'"))
941 last = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in last.split(' '))
942 first = ' '.join(p for p in name['firstnames'].split("-"))
943 first = ' '.join(p for p in first.split("."))
944 first = ' '.join(p for p in first.split("'"))
945 first = ''.join(gmTools.capitalize(text = p, mode = gmTools.CAPS_FIRST_ONLY) for p in first.split(' '))
946 suggestion = 'GMd-%s%s%s%s%s' % (target, last, first, dob, gender)
947 try:
948 import unidecode
949 suggestions.append(unidecode.unidecode(suggestion))
950 continue
951 except ImportError:
952 _log.debug('cannot transliterate external ID suggestion, <unidecode> module not installed')
953 if encoding is None:
954 suggestions.append(suggestion)
955 else:
956 suggestions.append(suggestion.encode(encoding))
957 return suggestions
958
959
960
962 """Merge another identity into this one.
963
964 Keep this one. Delete other one."""
965
966 if other_identity.ID == self.ID:
967 return True, None
968
969 curr_pat = gmCurrentPatient()
970 if curr_pat.connected:
971 if other_identity.ID == curr_pat.ID:
972 return False, _('Cannot merge active patient into another patient.')
973
974 now_here = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here())
975 distinguisher = _('merge of #%s into #%s @ %s') % (other_identity.ID, self.ID, now_here)
976
977 queries = []
978 args = {'pat2del': other_identity.ID, 'pat2keep': self.ID}
979
980
981 queries.append ({
982 'cmd': """
983 UPDATE clin.allergy_state SET
984 has_allergy = greatest (
985 (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s),
986 (SELECT has_allergy FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
987 ),
988 -- perhaps use least() to play it safe and make it appear longer ago than it might have been, actually ?
989 last_confirmed = greatest (
990 (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s),
991 (SELECT last_confirmed FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
992 )
993 WHERE
994 pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2keep)s)
995 """,
996 'args': args
997 })
998
999 queries.append ({
1000 'cmd': 'DELETE FROM clin.allergy_state WHERE pk = (SELECT pk_allergy_state FROM clin.v_pat_allergy_state WHERE pk_patient = %(pat2del)s)',
1001 'args': args
1002 })
1003
1004
1005 queries.append ({
1006 'cmd': """
1007 UPDATE clin.patient SET
1008 edc = coalesce (
1009 edc,
1010 (SELECT edc FROM clin.patient WHERE fk_identity = %(pat2del)s)
1011 )
1012 WHERE
1013 fk_identity = %(pat2keep)s
1014 """,
1015 'args': args
1016 })
1017
1018
1019
1020
1021 queries.append ({
1022 'cmd': """
1023 UPDATE dem.names d_n1 SET
1024 comment = coalesce (
1025 comment, ''
1026 ) || coalesce (
1027 ' (from identity: "' || (SELECT comment FROM dem.identity WHERE pk = %%(pat2del)s) || '")',
1028 ''
1029 ) || ' (during: "%s")'
1030 WHERE
1031 d_n1.id_identity = %%(pat2del)s
1032 """ % distinguisher,
1033 'args': args
1034 })
1035
1036 queries.append ({
1037 'cmd': u"""
1038 UPDATE dem.names d_n SET
1039 id_identity = %(pat2keep)s,
1040 lastnames = lastnames || ' [' || random()::TEXT || ']'
1041 WHERE
1042 d_n.id_identity = %(pat2del)s
1043 AND
1044 d_n.active IS false
1045 """,
1046 'args': args
1047 })
1048
1049
1050
1051
1052
1053 queries.append ({
1054 'cmd': """
1055 INSERT INTO dem.names (
1056 id_identity, active, firstnames, preferred, comment,
1057 lastnames
1058 )
1059 SELECT
1060 %(pat2keep)s, false, firstnames, preferred, comment,
1061 lastnames || ' [' || random()::text || ']'
1062 FROM dem.names d_n
1063 WHERE
1064 d_n.id_identity = %(pat2del)s
1065 AND
1066 d_n.active IS true
1067 """,
1068 'args': args
1069 })
1070
1071
1072
1073 queries.append ({
1074 'cmd': """
1075 UPDATE dem.lnk_identity2comm
1076 SET url = url || ' (%s)'
1077 WHERE
1078 fk_identity = %%(pat2del)s
1079 AND
1080 EXISTS (
1081 SELECT 1 FROM dem.lnk_identity2comm d_li2c
1082 WHERE d_li2c.fk_identity = %%(pat2keep)s AND d_li2c.url = url
1083 )
1084 """ % distinguisher,
1085 'args': args
1086 })
1087
1088 queries.append ({
1089 'cmd': """
1090 UPDATE dem.lnk_identity2ext_id
1091 SET external_id = external_id || ' (%s)'
1092 WHERE
1093 id_identity = %%(pat2del)s
1094 AND
1095 EXISTS (
1096 SELECT 1 FROM dem.lnk_identity2ext_id d_li2e
1097 WHERE
1098 d_li2e.id_identity = %%(pat2keep)s
1099 AND
1100 d_li2e.external_id = external_id
1101 AND
1102 d_li2e.fk_origin = fk_origin
1103 )
1104 """ % distinguisher,
1105 'args': args
1106 })
1107
1108 queries.append ({
1109 'cmd': """
1110 DELETE FROM dem.lnk_person_org_address
1111 WHERE
1112 id_identity = %(pat2del)s
1113 AND
1114 id_address IN (
1115 SELECT id_address FROM dem.lnk_person_org_address d_lpoa
1116 WHERE d_lpoa.id_identity = %(pat2keep)s
1117 )
1118 """,
1119 'args': args
1120 })
1121
1122
1123 FKs = gmPG2.get_foreign_keys2column (
1124 schema = 'dem',
1125 table = 'identity',
1126 column = 'pk'
1127 )
1128
1129 FKs.extend (gmPG2.get_foreign_keys2column (
1130 schema = 'clin',
1131 table = 'patient',
1132 column = 'fk_identity'
1133 ))
1134
1135
1136 cmd_template = 'UPDATE %s SET %s = %%(pat2keep)s WHERE %s = %%(pat2del)s'
1137 for FK in FKs:
1138 if FK['referencing_table'] in ['dem.names', 'clin.patient']:
1139 continue
1140 queries.append ({
1141 'cmd': cmd_template % (FK['referencing_table'], FK['referencing_column'], FK['referencing_column']),
1142 'args': args
1143 })
1144
1145
1146 queries.append ({
1147 'cmd': 'DELETE FROM clin.patient WHERE fk_identity = %(pat2del)s',
1148 'args': args
1149 })
1150
1151
1152 queries.append ({
1153 'cmd': 'delete from dem.identity where pk = %(pat2del)s',
1154 'args': args
1155 })
1156
1157 script_name = gmTools.get_unique_filename(prefix = 'gm-assimilate-%(pat2del)s-into-%(pat2keep)s-' % args, suffix = '.sql')
1158 _log.warning('identity [%s] is about to assimilate identity [%s], SQL script [%s]', self.ID, other_identity.ID, script_name)
1159
1160 script = io.open(script_name, 'wt')
1161 args['date'] = gmDateTime.pydt_strftime(gmDateTime.pydt_now_here(), '%Y %B %d %H:%M')
1162 script.write(_MERGE_SCRIPT_HEADER % args)
1163 for query in queries:
1164 script.write(query['cmd'] % args)
1165 script.write(';\n')
1166 script.write('\nROLLBACK;\n')
1167 script.write('--COMMIT;\n')
1168 script.close()
1169
1170 try:
1171 gmPG2.run_rw_queries(link_obj = link_obj, queries = queries, end_tx = True)
1172 except Exception:
1173 return False, _('The merge failed. Check the log and [%s]') % script_name
1174
1175 self.add_external_id (
1176 type_name = 'merged GNUmed identity primary key',
1177 value = 'GNUmed::pk::%s' % other_identity.ID,
1178 issuer = 'GNUmed'
1179 )
1180
1181 return True, None
1182
1183
1184
1186 cmd = """
1187 insert into clin.waiting_list (fk_patient, urgency, comment, area, list_position)
1188 values (
1189 %(pat)s,
1190 %(urg)s,
1191 %(cmt)s,
1192 %(area)s,
1193 (select coalesce((max(list_position) + 1), 1) from clin.waiting_list)
1194 )"""
1195 args = {'pat': self.ID, 'urg': urgency, 'cmt': comment, 'area': zone}
1196 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], verbose = True)
1197 gmHooks.run_hook_script(hook = 'after_waiting_list_modified')
1198
1199
1201 cmd = """SELECT * FROM clin.v_waiting_list WHERE pk_identity = %(pat)s"""
1202 args = {'pat': self.ID}
1203 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
1204 return rows
1205
1206 waiting_list_entries = property(get_waiting_list_entry, lambda x:x)
1207
1208
1211
1212 export_area = property(_get_export_area, lambda x:x)
1213
1214 - def export_as_gdt(self, filename=None, encoding='iso-8859-15', external_id_type=None):
1215
1216 template = '%s%s%s\r\n'
1217
1218 if filename is None:
1219 filename = gmTools.get_unique_filename (
1220 prefix = 'gm-patient-',
1221 suffix = '.gdt'
1222 )
1223
1224 gdt_file = io.open(filename, mode = 'wt', encoding = encoding, errors = 'strict')
1225
1226 gdt_file.write(template % ('013', '8000', '6301'))
1227 gdt_file.write(template % ('013', '9218', '2.10'))
1228 if external_id_type is None:
1229 gdt_file.write(template % ('%03d' % (9 + len(str(self.ID))), '3000', self.ID))
1230 else:
1231 ext_ids = self.get_external_ids(id_type = external_id_type)
1232 if len(ext_ids) > 0:
1233 gdt_file.write(template % ('%03d' % (9 + len(ext_ids[0]['value'])), '3000', ext_ids[0]['value']))
1234 gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['lastnames']])), '3101', self._payload[self._idx['lastnames']]))
1235 gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['firstnames']])), '3102', self._payload[self._idx['firstnames']]))
1236 gdt_file.write(template % ('%03d' % (9 + len(self._payload[self._idx['dob']].strftime('%d%m%Y'))), '3103', self._payload[self._idx['dob']].strftime('%d%m%Y')))
1237 gdt_file.write(template % ('010', '3110', gmXdtMappings.map_gender_gm2xdt[self._payload[self._idx['gender']]]))
1238 gdt_file.write(template % ('025', '6330', 'GNUmed::9206::encoding'))
1239 gdt_file.write(template % ('%03d' % (9 + len(encoding)), '6331', encoding))
1240 if external_id_type is None:
1241 gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source'))
1242 gdt_file.write(template % ('017', '6333', 'internal'))
1243 else:
1244 if len(ext_ids) > 0:
1245 gdt_file.write(template % ('029', '6332', 'GNUmed::3000::source'))
1246 gdt_file.write(template % ('%03d' % (9 + len(external_id_type)), '6333', external_id_type))
1247
1248 gdt_file.close()
1249
1250 return filename
1251
1253
1254 if filename is None:
1255 filename = gmTools.get_unique_filename (
1256 prefix = 'gm-LinuxMedNews_demographics-',
1257 suffix = '.xml'
1258 )
1259
1260 dob_format = '%Y-%m-%d'
1261 pat = etree.Element('patient')
1262
1263 first = etree.SubElement(pat, 'firstname')
1264 first.text = gmTools.coalesce(self._payload[self._idx['firstnames']], '')
1265
1266 last = etree.SubElement(pat, 'lastname')
1267 last.text = gmTools.coalesce(self._payload[self._idx['lastnames']], '')
1268
1269
1270
1271
1272
1273
1274 pref = etree.SubElement(pat, 'name_prefix')
1275 pref.text = gmTools.coalesce(self._payload[self._idx['title']], '')
1276
1277 suff = etree.SubElement(pat, 'name_suffix')
1278 suff.text = ''
1279
1280 dob = etree.SubElement(pat, 'DOB')
1281 dob.set('format', dob_format)
1282 dob.text = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '')
1283
1284 gender = etree.SubElement(pat, 'gender')
1285 gender.set('comment', self.gender_string)
1286 if self._payload[self._idx['gender']] is None:
1287 gender.text = ''
1288 else:
1289 gender.text = map_gender2mf[self._payload[self._idx['gender']]]
1290
1291 home = etree.SubElement(pat, 'home_address')
1292 adrs = self.get_addresses(address_type = 'home')
1293 if len(adrs) > 0:
1294 adr = adrs[0]
1295 city = etree.SubElement(home, 'city')
1296 city.set('comment', gmTools.coalesce(adr['suburb'], ''))
1297 city.text = gmTools.coalesce(adr['urb'], '')
1298
1299 region = etree.SubElement(home, 'region')
1300 region.set('comment', gmTools.coalesce(adr['l10n_region'], ''))
1301 region.text = gmTools.coalesce(adr['code_region'], '')
1302
1303 zipcode = etree.SubElement(home, 'postal_code')
1304 zipcode.text = gmTools.coalesce(adr['postcode'], '')
1305
1306 street = etree.SubElement(home, 'street')
1307 street.set('comment', gmTools.coalesce(adr['notes_street'], ''))
1308 street.text = gmTools.coalesce(adr['street'], '')
1309
1310 no = etree.SubElement(home, 'number')
1311 no.set('subunit', gmTools.coalesce(adr['subunit'], ''))
1312 no.set('comment', gmTools.coalesce(adr['notes_subunit'], ''))
1313 no.text = gmTools.coalesce(adr['number'], '')
1314
1315 country = etree.SubElement(home, 'country')
1316 country.set('comment', adr['l10n_country'])
1317 country.text = gmTools.coalesce(adr['code_country'], '')
1318
1319 phone = etree.SubElement(pat, 'home_phone')
1320 rec = self.get_comm_channels(comm_medium = 'homephone')
1321 if len(rec) > 0:
1322 if not rec[0]['is_confidential']:
1323 phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
1324 phone.text = rec[0]['url']
1325
1326 phone = etree.SubElement(pat, 'work_phone')
1327 rec = self.get_comm_channels(comm_medium = 'workphone')
1328 if len(rec) > 0:
1329 if not rec[0]['is_confidential']:
1330 phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
1331 phone.text = rec[0]['url']
1332
1333 phone = etree.SubElement(pat, 'cell_phone')
1334 rec = self.get_comm_channels(comm_medium = 'mobile')
1335 if len(rec) > 0:
1336 if not rec[0]['is_confidential']:
1337 phone.set('comment', gmTools.coalesce(rec[0]['comment'], ''))
1338 phone.text = rec[0]['url']
1339
1340 tree = etree.ElementTree(pat)
1341 tree.write(filename, encoding = 'UTF-8')
1342
1343 return filename
1344
1345
1347
1348
1349
1350
1351
1352 dob_format = '%Y%m%d'
1353
1354 import vobject
1355
1356 vc = vobject.vCard()
1357 vc.add('kind')
1358 vc.kind.value = 'individual'
1359
1360 vc.add('fn')
1361 vc.fn.value = self.get_description(with_nickname = False)
1362 vc.add('n')
1363 vc.n.value = vobject.vcard.Name(family = self._payload[self._idx['lastnames']], given = self._payload[self._idx['firstnames']])
1364
1365
1366
1367 vc.add('title')
1368 vc.title.value = gmTools.coalesce(self._payload[self._idx['title']], '')
1369 vc.add('gender')
1370
1371 vc.gender.value = map_gender2vcard[self._payload[self._idx['gender']]]
1372 vc.add('bday')
1373 vc.bday.value = gmDateTime.pydt_strftime(self._payload[self._idx['dob']], dob_format, accuracy = gmDateTime.acc_days, none_str = '')
1374
1375 channels = self.get_comm_channels(comm_medium = 'homephone')
1376 if len(channels) > 0:
1377 if not channels[0]['is_confidential']:
1378 vc.add('tel')
1379 vc.tel.value = channels[0]['url']
1380 vc.tel.type_param = 'HOME'
1381 channels = self.get_comm_channels(comm_medium = 'workphone')
1382 if len(channels) > 0:
1383 if not channels[0]['is_confidential']:
1384 vc.add('tel')
1385 vc.tel.value = channels[0]['url']
1386 vc.tel.type_param = 'WORK'
1387 channels = self.get_comm_channels(comm_medium = 'mobile')
1388 if len(channels) > 0:
1389 if not channels[0]['is_confidential']:
1390 vc.add('tel')
1391 vc.tel.value = channels[0]['url']
1392 vc.tel.type_param = 'CELL'
1393 channels = self.get_comm_channels(comm_medium = 'fax')
1394 if len(channels) > 0:
1395 if not channels[0]['is_confidential']:
1396 vc.add('tel')
1397 vc.tel.value = channels[0]['url']
1398 vc.tel.type_param = 'FAX'
1399 channels = self.get_comm_channels(comm_medium = 'email')
1400 if len(channels) > 0:
1401 if not channels[0]['is_confidential']:
1402 vc.add('email')
1403 vc.tel.value = channels[0]['url']
1404 vc.tel.type_param = 'INTERNET'
1405 channels = self.get_comm_channels(comm_medium = 'web')
1406 if len(channels) > 0:
1407 if not channels[0]['is_confidential']:
1408 vc.add('url')
1409 vc.tel.value = channels[0]['url']
1410 vc.tel.type_param = 'INTERNET'
1411
1412 adrs = self.get_addresses(address_type = 'home')
1413 if len(adrs) > 0:
1414 home_adr = adrs[0]
1415 vc.add('adr')
1416 vc.adr.type_param = 'HOME'
1417 vc.adr.value = vobject.vcard.Address()
1418 vc_adr = vc.adr.value
1419 vc_adr.extended = gmTools.coalesce(home_adr['subunit'], '')
1420 vc_adr.street = gmTools.coalesce(home_adr['street'], '', '%s ') + gmTools.coalesce(home_adr['number'], '')
1421 vc_adr.region = gmTools.coalesce(home_adr['l10n_region'], '')
1422 vc_adr.code = gmTools.coalesce(home_adr['postcode'], '')
1423 vc_adr.city = gmTools.coalesce(home_adr['urb'], '')
1424 vc_adr.country = gmTools.coalesce(home_adr['l10n_country'], '')
1425
1426
1427
1428 if filename is None:
1429 filename = gmTools.get_unique_filename (
1430 prefix = 'gm-patient-',
1431 suffix = '.vcf'
1432 )
1433 vcf = io.open(filename, mode = 'wt', encoding = 'utf8')
1434 try:
1435 vcf.write(vc.serialize())
1436 except UnicodeDecodeError:
1437 _log.exception('failed to serialize VCF data')
1438 vcf.close()
1439 return 'cannot-serialize.vcf'
1440 vcf.close()
1441
1442 return filename
1443
1444
1454
1455
1457 """
1458 http://blog.thenetimpact.com/2011/07/decoding-qr-codes-how-to-format-data-for-qr-code-generators/
1459 https://www.nttdocomo.co.jp/english/service/developer/make/content/barcode/function/application/addressbook/index.html
1460
1461 MECARD:N:NAME;ADR:pobox,subunit,unit,street,ort,region,zip,country;TEL:111111111;FAX:22222222;EMAIL:mail@praxis.org;
1462
1463
1464 MECARD:N:lastname,firstname;BDAY:YYYYMMDD;ADR:pobox,subunit,number,street,location,region,zip,country;;
1465 MECARD:N:$<lastname::::>$,$<firstname::::>$;BDAY:$<date_of_birth::%Y%m%d::>$;ADR:,$<adr_subunit::home::>$,$<adr_number::home::>$,$<adr_street::home::>$,$<adr_location::home::>$,,$<adr_postcode::home::>$,$<adr_country::home::>$;;
1466 """
1467 MECARD = 'MECARD:N:%s,%s;' % (
1468 self._payload[self._idx['lastnames']],
1469 self._payload[self._idx['firstnames']]
1470 )
1471 if self._payload[self._idx['dob']] is not None:
1472 MECARD += 'BDAY:%s;' % gmDateTime.pydt_strftime (
1473 self._payload[self._idx['dob']],
1474 '%Y%m%d',
1475 accuracy = gmDateTime.acc_days,
1476 none_str = ''
1477 )
1478 adrs = self.get_addresses(address_type = 'home')
1479 if len(adrs) > 0:
1480 MECARD += 'ADR:,%(subunit)s,%(number)s,%(street)s,%(urb)s,,%(postcode)s,%(l10n_country)s;' % adrs[0]
1481 comms = self.get_comm_channels(comm_medium = 'homephone')
1482 if len(comms) > 0:
1483 if not comms[0]['is_confidential']:
1484 MECARD += 'TEL:%s;' % comms[0]['url']
1485 comms = self.get_comm_channels(comm_medium = 'fax')
1486 if len(comms) > 0:
1487 if not comms[0]['is_confidential']:
1488 MECARD += 'FAX:%s;' % comms[0]['url']
1489 comms = self.get_comm_channels(comm_medium = 'email')
1490 if len(comms) > 0:
1491 if not comms[0]['is_confidential']:
1492 MECARD += 'EMAIL:%s;' % comms[0]['url']
1493 return MECARD
1494
1495 MECARD = property(_get_mecard)
1496
1497
1498
1499
1502
1503
1505 """Link an occupation with a patient, creating the occupation if it does not exists.
1506
1507 @param occupation The name of the occupation to link the patient to.
1508 """
1509 if (activities is None) and (occupation is None):
1510 return True
1511
1512 occupation = occupation.strip()
1513 if len(occupation) == 0:
1514 return True
1515
1516 if activities is not None:
1517 activities = activities.strip()
1518
1519 args = {'act': activities, 'pat_id': self.pk_obj, 'job': occupation}
1520
1521 cmd = "select activities from dem.v_person_jobs where pk_identity = %(pat_id)s and l10n_occupation = _(%(job)s)"
1522 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
1523
1524 queries = []
1525 if len(rows) == 0:
1526 queries.append ({
1527 'cmd': "INSERT INTO dem.lnk_job2person (fk_identity, fk_occupation, activities) VALUES (%(pat_id)s, dem.create_occupation(%(job)s), %(act)s)",
1528 'args': args
1529 })
1530 else:
1531 if rows[0]['activities'] != activities:
1532 queries.append ({
1533 'cmd': "update dem.lnk_job2person set activities=%(act)s where fk_identity=%(pat_id)s and fk_occupation=(select id from dem.occupation where _(name) = _(%(job)s))",
1534 'args': args
1535 })
1536
1537 rows, idx = gmPG2.run_rw_queries(queries = queries)
1538
1539 return True
1540
1542 if occupation is None:
1543 return True
1544 occupation = occupation.strip()
1545 cmd = "delete from dem.lnk_job2person where fk_identity=%(pk)s and fk_occupation in (select id from dem.occupation where _(name) = _(%(job)s))"
1546 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': {'pk': self.pk_obj, 'job': occupation}}])
1547 return True
1548
1549
1550
1552 cmd = "select * from dem.v_person_comms where pk_identity = %s"
1553 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self.pk_obj]}], get_col_idx = True)
1554
1555 filtered = rows
1556
1557 if comm_medium is not None:
1558 filtered = []
1559 for row in rows:
1560 if row['comm_type'] == comm_medium:
1561 filtered.append(row)
1562
1563 return [ gmDemographicRecord.cCommChannel(row = {
1564 'pk_field': 'pk_lnk_identity2comm',
1565 'data': r,
1566 'idx': idx
1567 }) for r in filtered
1568 ]
1569
1570 comm_channels = property(get_comm_channels, lambda x:x)
1571
1572 - def link_comm_channel(self, comm_medium=None, url=None, is_confidential=False, pk_channel_type=None):
1573 """Link a communication medium with a patient.
1574
1575 @param comm_medium The name of the communication medium.
1576 @param url The communication resource locator.
1577 @type url A str instance.
1578 @param is_confidential Wether the data must be treated as confidential.
1579 @type is_confidential A bool instance.
1580 """
1581 comm_channel = gmDemographicRecord.create_comm_channel (
1582 comm_medium = comm_medium,
1583 url = url,
1584 is_confidential = is_confidential,
1585 pk_channel_type = pk_channel_type,
1586 pk_identity = self.pk_obj
1587 )
1588 return comm_channel
1589
1595
1596
1597
1599
1600 cmd = "SELECT * FROM dem.v_pat_addresses WHERE pk_identity = %(pat)s"
1601 args = {'pat': self.pk_obj}
1602 if address_type is not None:
1603 cmd = cmd + " AND address_type = %(typ)s"
1604 args['typ'] = address_type
1605
1606 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
1607
1608 return [
1609 gmDemographicRecord.cPatientAddress(row = {'idx': idx, 'data': r, 'pk_field': 'pk_address'})
1610 for r in rows
1611 ]
1612
1613 - def link_address(self, number=None, street=None, postcode=None, urb=None, region_code=None, country_code=None, subunit=None, suburb=None, id_type=None, address=None, adr_type=None):
1614 """Link an address with a patient, creating the address if it does not exists.
1615
1616 @param id_type The primary key of the address type.
1617 """
1618 if address is None:
1619 address = gmDemographicRecord.create_address (
1620 country_code = country_code,
1621 region_code = region_code,
1622 urb = urb,
1623 suburb = suburb,
1624 postcode = postcode,
1625 street = street,
1626 number = number,
1627 subunit = subunit
1628 )
1629
1630 if address is None:
1631 return None
1632
1633
1634 cmd = "SELECT id_address FROM dem.lnk_person_org_address WHERE id_identity = %(pat)s AND id_address = %(adr)s"
1635 args = {'pat': self.pk_obj, 'adr': address['pk_address']}
1636 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
1637
1638
1639 if len(rows) == 0:
1640 args = {'id': self.pk_obj, 'adr': address['pk_address'], 'type': id_type}
1641 cmd = """
1642 INSERT INTO dem.lnk_person_org_address(id_identity, id_address)
1643 VALUES (%(id)s, %(adr)s)
1644 RETURNING id_address"""
1645 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True)
1646
1647 linked_adr = gmDemographicRecord.cPatientAddress(aPK_obj = rows[0]['id_address'])
1648
1649
1650 if id_type is None:
1651 if adr_type is not None:
1652 id_type = gmDemographicRecord.create_address_type(address_type = adr_type)
1653 if id_type is not None:
1654 linked_adr['pk_address_type'] = id_type
1655 linked_adr.save()
1656
1657 return linked_adr
1658
1660 """Remove an address from the patient.
1661
1662 The address itself stays in the database.
1663 The address can be either cAdress or cPatientAdress.
1664 """
1665 if pk_address is None:
1666 args = {'person': self.pk_obj, 'adr': address['pk_address']}
1667 else:
1668 args = {'person': self.pk_obj, 'adr': pk_address}
1669 cmd = """
1670 DELETE FROM dem.lnk_person_org_address
1671 WHERE
1672 dem.lnk_person_org_address.id_identity = %(person)s
1673 AND
1674 dem.lnk_person_org_address.id_address = %(adr)s
1675 AND
1676 NOT EXISTS(SELECT 1 FROM bill.bill WHERE fk_receiver_address = dem.lnk_person_org_address.id)
1677 """
1678 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
1679
1680
1681
1682 - def get_bills(self, order_by=None, pk_patient=None):
1683 return gmBilling.get_bills (
1684 order_by = order_by,
1685 pk_patient = self.pk_obj
1686 )
1687
1688 bills = property(get_bills, lambda x:x)
1689
1690
1691
1693 cmd = """
1694 SELECT
1695 d_rt.description,
1696 d_vap.*
1697 FROM
1698 dem.v_all_persons d_vap,
1699 dem.relation_types d_rt,
1700 dem.lnk_person2relative d_lp2r
1701 WHERE
1702 ( d_lp2r.id_identity = %(pk)s
1703 AND
1704 d_vap.pk_identity = d_lp2r.id_relative
1705 AND
1706 d_rt.id = d_lp2r.id_relation_type
1707 ) or (
1708 d_lp2r.id_relative = %(pk)s
1709 AND
1710 d_vap.pk_identity = d_lp2r.id_identity
1711 AND
1712 d_rt.inverse = d_lp2r.id_relation_type
1713 )"""
1714 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': {'pk': self.pk_obj}}])
1715 if len(rows) == 0:
1716 return []
1717 return [(row[0], cPerson(row = {'data': row[1:], 'idx':idx, 'pk_field': 'pk_identity'})) for row in rows]
1718
1720
1721 id_new_relative = create_dummy_identity()
1722
1723 relative = cPerson(aPK_obj=id_new_relative)
1724
1725
1726 relative.add_name( '**?**', self.get_names()['lastnames'])
1727
1728 if 'relatives' in self._ext_cache:
1729 del self._ext_cache['relatives']
1730 cmd = """
1731 insert into dem.lnk_person2relative (
1732 id_identity, id_relative, id_relation_type
1733 ) values (
1734 %s, %s, (select id from dem.relation_types where description = %s)
1735 )"""
1736 rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': [self.ID, id_new_relative, rel_type ]}])
1737 return True
1738
1740
1741 self.set_relative(None, relation)
1742
1747
1748 emergency_contact_in_database = property(_get_emergency_contact_from_database, lambda x:x)
1749
1750
1751
1752
1760
1761
1802
1803
1804 - def dob_in_range(self, min_distance='1 week', max_distance='1 week'):
1805 if self['dob'] is None:
1806 return False
1807 cmd = 'select dem.dob_is_in_range(%(dob)s, %(min)s, %(max)s)'
1808 rows, idx = gmPG2.run_ro_queries (
1809 queries = [{
1810 'cmd': cmd,
1811 'args': {'dob': self['dob'], 'min': min_distance, 'max': max_distance}
1812 }]
1813 )
1814 return rows[0][0]
1815
1816
1818 if self['dob'] is None:
1819 return None
1820 now = gmDateTime.pydt_now_here()
1821 if now.month < self['dob'].month:
1822 return False
1823 if now.month > self['dob'].month:
1824 return True
1825
1826 if now.day < self['dob'].day:
1827 return False
1828 if now.day > self['dob'].day:
1829 return True
1830
1831 return False
1832
1833 current_birthday_passed = property(_get_current_birthday_passed)
1834
1835
1845
1846 birthday_this_year = property(_get_birthday_this_year)
1847
1848
1858
1859 birthday_next_year = property(_get_birthday_next_year)
1860
1861
1871
1872 birthday_last_year = property(_get_birthday_last_year, lambda x:x)
1873
1874
1875
1876
1878 cmd = 'select * from clin.v_most_recent_encounters where pk_patient=%s'
1879 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': [self._payload[self._idx['pk_identity']]]}])
1880 if len(rows) > 0:
1881 return rows[0]
1882 else:
1883 return None
1884
1887
1888 messages = property(get_messages, lambda x:x)
1889
1892
1893 overdue_messages = property(_get_overdue_messages, lambda x:x)
1894
1895
1898
1899
1905
1906 dynamic_hints = property(_get_dynamic_hints, lambda x:x)
1907
1908
1911
1912 suppressed_hints = property(_get_suppressed_hints, lambda x:x)
1913
1914
1916 if self._payload[self._idx['pk_primary_provider']] is None:
1917 return None
1918 cmd = "SELECT * FROM dem.v_all_persons WHERE pk_identity = (SELECT pk_identity FROM dem.v_staff WHERE pk_staff = %(pk_staff)s)"
1919 args = {'pk_staff': self._payload[self._idx['pk_primary_provider']]}
1920 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
1921 if len(rows) == 0:
1922 return None
1923 return cPerson(row = {'data': rows[0], 'idx': idx, 'pk_field': 'pk_identity'})
1924
1925 primary_provider_identity = property(_get_primary_provider_identity, lambda x:x)
1926
1927
1929 if self._payload[self._idx['pk_primary_provider']] is None:
1930 return None
1931 from Gnumed.business import gmStaff
1932 return gmStaff.cStaff(aPK_obj = self._payload[self._idx['pk_primary_provider']])
1933
1934 primary_provider = property(_get_primary_provider, lambda x:x)
1935
1936
1937
1938
1940 """Format patient demographics into patient specific path name fragment."""
1941
1942 return gmTools.fname_sanitize('%s-%s-%s' % (
1943 self._payload[self._idx['lastnames']],
1944 self._payload[self._idx['firstnames']],
1945 self.get_formatted_dob(format = '%Y-%m-%d')
1946 ))
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970 subdir_name = property(get_subdir_name, lambda x:x)
1971
1972
1974 cmd = 'SELECT 1 FROM clin.patient WHERE fk_identity = %(pk_pat)s'
1975 args = {'pk_pat': pk_identity}
1976 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = False)
1977 if len(rows) == 0:
1978 return False
1979 return True
1980
1981
1983 cmd = """
1984 INSERT INTO clin.patient (fk_identity)
1985 SELECT %(pk_ident)s WHERE NOT EXISTS (
1986 SELECT 1 FROM clin.patient c_p WHERE fk_identity = %(pk_ident)s
1987 )"""
1988 args = {'pk_ident': pk_identity}
1989 queries = [{'cmd': cmd, 'args': args}]
1990 gmPG2.run_rw_queries(queries = queries)
1991 return True
1992
1993
1994
1995
1996 _yield = lambda x:x
1997
1999 if not callable(yielder):
2000 raise TypeError('yielder <%s> is not callable' % yielder)
2001 global _yield
2002 _yield = yielder
2003 _log.debug('setting yielder to <%s>', yielder)
2004
2005
2007 """Represents a person which is a patient.
2008
2009 - a specializing subclass of cPerson turning it into a patient
2010 - its use is to cache subobjects like EMR and document folder
2011 """
2012 - def __init__(self, aPK_obj=None, row=None):
2013 cPerson.__init__(self, aPK_obj = aPK_obj, row = row)
2014 self.__emr_access_lock = threading.Lock()
2015 self.__emr = None
2016 self.__doc_folder = None
2017
2018
2020 """Do cleanups before dying.
2021
2022 - note that this may be called in a thread
2023 """
2024 if self.__emr is not None:
2025 self.__emr.cleanup()
2026 if self.__doc_folder is not None:
2027 self.__doc_folder.cleanup()
2028 cPerson.cleanup(self)
2029
2030
2035
2036
2038 _log.debug('accessing EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
2039
2040
2041 if self.__emr is not None:
2042 return self.__emr
2043
2044 stack_logged = False
2045 got_lock = self.__emr_access_lock.acquire(False)
2046 if not got_lock:
2047
2048 call_stack = inspect.stack()
2049 call_stack.reverse()
2050 for idx in range(1, len(call_stack)):
2051 caller = call_stack[idx]
2052 _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
2053 del call_stack
2054 stack_logged = True
2055
2056 for idx in range(500):
2057 _yield()
2058 time.sleep(0.1)
2059 _yield()
2060 got_lock = self.__emr_access_lock.acquire(False)
2061 if got_lock:
2062 break
2063 if not got_lock:
2064 _log.error('still failed to acquire EMR access lock, aborting (thread [%s])', threading.get_ident())
2065 self.__emr_access_lock.release()
2066 raise AttributeError('cannot lock access to EMR for identity [%s]' % self._payload[self._idx['pk_identity']])
2067
2068 _log.debug('pulling chart for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
2069 if not stack_logged:
2070
2071 call_stack = inspect.stack()
2072 call_stack.reverse()
2073 for idx in range(1, len(call_stack)):
2074 caller = call_stack[idx]
2075 _log.debug('%s[%s] @ [%s] in [%s]', ' '* idx, caller[3], caller[2], caller[1])
2076 del call_stack
2077 stack_logged = True
2078
2079 self.is_patient = True
2080 from Gnumed.business import gmClinicalRecord
2081 emr = gmClinicalRecord.cClinicalRecord(aPKey = self._payload[self._idx['pk_identity']])
2082
2083 _log.debug('returning EMR for identity [%s], thread [%s]', self._payload[self._idx['pk_identity']], threading.get_ident())
2084 self.__emr = emr
2085 self.__emr_access_lock.release()
2086 return self.__emr
2087
2088 emr = property(get_emr, lambda x:x)
2089
2090
2092 if self.__doc_folder is None:
2093 self.__doc_folder = cDocumentFolder(aPKey = self._payload[self._idx['pk_identity']])
2094 return self.__doc_folder
2095
2096 document_folder = property(get_document_folder, lambda x:x)
2097
2098
2100 """Patient Borg to hold the currently active patient.
2101
2102 There may be many instances of this but they all share state.
2103
2104 The underlying dem.identity row must have .deleted set to FALSE.
2105
2106 The sequence of events when changing the active patient:
2107
2108 1) Registered callbacks are run.
2109 Those are run synchronously. If a callback
2110 returns False or throws an exception the
2111 patient switch is aborted. Callback code
2112 can rely on the patient still being active
2113 and to not go away until it returns. It
2114 is not passed any arguments and must return
2115 False or True.
2116
2117 2) Signal "pre_patient_unselection" is sent.
2118 This does not wait for nor check results.
2119 The keyword pk_identity contains the
2120 PK of the person being switched away
2121 from.
2122
2123 3) the current patient is unset (gmNull.cNull)
2124
2125 4) Signal "current_patient_unset" is sent
2126 At this point resetting GUI fields to
2127 empty should be done. The active patient
2128 is not there anymore.
2129
2130 This does not wait for nor check results.
2131
2132 5) The current patient is set to the new value.
2133 The new patient can also remain gmNull.cNull
2134 in case the calling code explicitely unset
2135 the current patient.
2136
2137 6) Signal "post_patient_selection" is sent.
2138 Code listening to this signal can
2139 assume that the new patient is
2140 already active.
2141 """
2142 - def __init__(self, patient=None, forced_reload=False):
2143 """Change or get currently active patient.
2144
2145 patient:
2146 * None: get currently active patient
2147 * -1: unset currently active patient
2148 * cPatient instance: set active patient if possible
2149 """
2150
2151 try:
2152 self.patient
2153 except AttributeError:
2154 self.patient = gmNull.cNull()
2155 self.__register_interests()
2156
2157
2158
2159 self.__lock_depth = 0
2160
2161 self.__callbacks_before_switching_away_from_patient = []
2162
2163
2164 if patient is None:
2165 return None
2166
2167
2168 if self.locked:
2169 _log.error('patient [%s] is locked, cannot change to [%s]' % (self.patient['pk_identity'], patient))
2170 return None
2171
2172
2173 if patient == -1:
2174 _log.debug('explicitly unsetting current patient')
2175 if not self.__run_callbacks_before_switching_away_from_patient():
2176 _log.error('not unsetting current patient, at least one pre-change callback failed')
2177 return None
2178 self.__send_pre_unselection_notification()
2179 self.patient.cleanup()
2180 self.patient = gmNull.cNull()
2181 self.__send_unselection_notification()
2182
2183 time.sleep(0.5)
2184 self.__send_selection_notification()
2185 return None
2186
2187
2188 if not isinstance(patient, cPatient):
2189 _log.error('cannot set active patient to [%s], must be either None, -1 or cPatient instance' % str(patient))
2190 raise TypeError('gmPerson.gmCurrentPatient.__init__(): <patient> must be None, -1 or cPatient instance but is: %s' % str(patient))
2191
2192
2193 if (self.patient['pk_identity'] == patient['pk_identity']) and not forced_reload:
2194 return None
2195
2196 if patient['is_deleted']:
2197 _log.error('cannot set active patient to disabled dem.identity row: %s', patient)
2198 raise ValueError('gmPerson.gmCurrentPatient.__init__(): <patient> is disabled: %s' % patient)
2199
2200
2201 _log.info('patient change [%s] -> [%s] requested', self.patient['pk_identity'], patient['pk_identity'])
2202
2203 if not self.__run_callbacks_before_switching_away_from_patient():
2204 _log.error('not changing current patient, at least one pre-change callback failed')
2205 return None
2206
2207
2208 self.__send_pre_unselection_notification()
2209 self.patient.cleanup()
2210 self.patient = gmNull.cNull()
2211 self.__send_unselection_notification()
2212
2213 time.sleep(0.5)
2214 self.patient = patient
2215
2216
2217 self.patient.emr
2218 self.__send_selection_notification()
2219
2220 return None
2221
2222
2225
2226
2228
2229 if isinstance(self.patient, gmNull.cNull):
2230 return True
2231
2232
2233 if kwds['table'] not in ['dem.identity', 'dem.names']:
2234 return True
2235
2236
2237 if int(kwds['pk_identity']) != self.patient.ID:
2238 return True
2239
2240 if kwds['table'] == 'dem.identity':
2241
2242 if kwds['operation'] != 'UPDATE':
2243 return True
2244
2245 self.patient.refetch_payload()
2246 return True
2247
2248
2249
2250
2252
2253
2254
2255
2256
2257 if not callable(callback):
2258 raise TypeError('callback [%s] not callable' % callback)
2259
2260 self.__callbacks_before_switching_away_from_patient.append(callback)
2261
2262
2265
2266 connected = property(_get_connected, lambda x:x)
2267
2268
2270 return (self.__lock_depth > 0)
2271
2273 if locked:
2274 self.__lock_depth = self.__lock_depth + 1
2275 gmDispatcher.send(signal = 'patient_locked', sender = self.__class__.__name__)
2276 else:
2277 if self.__lock_depth == 0:
2278 _log.error('lock/unlock imbalance, tried to refcount lock depth below 0')
2279 return
2280 else:
2281 self.__lock_depth = self.__lock_depth - 1
2282 gmDispatcher.send(signal = 'patient_unlocked', sender = self.__class__.__name__)
2283
2284 locked = property(_get_locked, _set_locked)
2285
2286
2288 _log.info('forced patient unlock at lock depth [%s]' % self.__lock_depth)
2289 self.__lock_depth = 0
2290 gmDispatcher.send(signal = 'patient_unlocked', sender = self.__class__.__name__)
2291
2292
2293
2294
2296 if isinstance(self.patient, gmNull.cNull):
2297 return True
2298
2299 for call_back in self.__callbacks_before_switching_away_from_patient:
2300 try:
2301 successful = call_back()
2302 except:
2303 _log.exception('callback [%s] failed', call_back)
2304 print("*** pre-change callback failed ***")
2305 print(type(call_back))
2306 print(call_back)
2307 return False
2308
2309 if not successful:
2310 _log.error('callback [%s] returned False', call_back)
2311 return False
2312
2313 return True
2314
2315
2317 """Sends signal when current patient is about to be unset.
2318
2319 This does NOT wait for signal handlers to complete.
2320 """
2321 kwargs = {
2322 'signal': 'pre_patient_unselection',
2323 'sender': self.__class__.__name__,
2324 'pk_identity': self.patient['pk_identity']
2325 }
2326 gmDispatcher.send(**kwargs)
2327
2328
2330 """Sends signal when the previously active patient has
2331 been unset during a change of active patient.
2332
2333 This is the time to initialize GUI fields to empty values.
2334
2335 This does NOT wait for signal handlers to complete.
2336 """
2337 kwargs = {
2338 'signal': 'current_patient_unset',
2339 'sender': self.__class__.__name__
2340 }
2341 gmDispatcher.send(**kwargs)
2342
2343
2345 """Sends signal when another patient has actually been made active."""
2346 kwargs = {
2347 'signal': 'post_patient_selection',
2348 'sender': self.__class__.__name__,
2349 'pk_identity': self.patient['pk_identity']
2350 }
2351 gmDispatcher.send(**kwargs)
2352
2353
2354
2355
2357
2358
2359
2360
2361
2362
2363 if attribute == 'patient':
2364 raise AttributeError
2365 if isinstance(self.patient, gmNull.cNull):
2366 _log.error("[%s]: cannot getattr(%s, '%s'), patient attribute not connected to a patient", self, self.patient, attribute)
2367 raise AttributeError("[%s]: cannot getattr(%s, '%s'), patient attribute not connected to a patient" % (self, self.patient, attribute))
2368 return getattr(self.patient, attribute)
2369
2370
2371
2372
2374 """Return any attribute if known how to retrieve it by proxy.
2375 """
2376 return self.patient[attribute]
2377
2378
2381
2382
2383
2384
2387 gmMatchProvider.cMatchProvider_SQL2.__init__(
2388 self,
2389 queries = [
2390 """SELECT
2391 pk_staff AS data,
2392 short_alias || ' (' || coalesce(title, '') || ' ' || firstnames || ' ' || lastnames || ')' AS list_label,
2393 short_alias || ' (' || coalesce(title, '') || ' ' || firstnames || ' ' || lastnames || ')' AS field_label
2394 FROM dem.v_staff
2395 WHERE
2396 is_active AND (
2397 short_alias %(fragment_condition)s OR
2398 firstnames %(fragment_condition)s OR
2399 lastnames %(fragment_condition)s OR
2400 db_user %(fragment_condition)s
2401 )
2402 """
2403 ]
2404 )
2405 self.setThresholds(1, 2, 3)
2406
2407
2408
2409
2410 -def create_name(pk_person, firstnames, lastnames, active=False):
2411 queries = [{
2412 'cmd': "select dem.add_name(%s, %s, %s, %s)",
2413 'args': [pk_person, firstnames, lastnames, active]
2414 }]
2415 rows, idx = gmPG2.run_rw_queries(queries=queries, return_data=True)
2416 name = cPersonName(aPK_obj = rows[0][0])
2417 return name
2418
2419
2420 -def create_identity(gender=None, dob=None, lastnames=None, firstnames=None, comment=None):
2421
2422 cmd1 = "INSERT INTO dem.identity (gender, dob, comment) VALUES (%s, %s, %s)"
2423 cmd2 = """
2424 INSERT INTO dem.names (
2425 id_identity, lastnames, firstnames
2426 ) VALUES (
2427 currval('dem.identity_pk_seq'), coalesce(%s, 'xxxDEFAULTxxx'), coalesce(%s, 'xxxDEFAULTxxx')
2428 ) RETURNING id_identity"""
2429
2430 try:
2431 rows, idx = gmPG2.run_rw_queries (
2432 queries = [
2433 {'cmd': cmd1, 'args': [gender, dob, comment]},
2434 {'cmd': cmd2, 'args': [lastnames, firstnames]}
2435
2436 ],
2437 return_data = True
2438 )
2439 except Exception:
2440 _log.exception('cannot create identity')
2441 gmLog2.log_stack_trace()
2442 return None
2443 ident = cPerson(aPK_obj = rows[0][0])
2444 gmHooks.run_hook_script(hook = 'post_person_creation')
2445 return ident
2446
2447
2449 _log.info('disabling identity [%s]', pk_identity)
2450 cmd = "UPDATE dem.identity SET deleted = true WHERE pk = %(pk)s"
2451 args = {'pk': pk_identity}
2452 gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
2453 return True
2454
2455
2463
2464
2466 cmd = 'SELECT EXISTS(SELECT 1 FROM dem.identity where pk = %(pk)s)'
2467 args = {'pk': pk_identity}
2468 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}])
2469 return rows[0][0]
2470
2471
2473 """Set active patient.
2474
2475 If patient is -1 the active patient will be UNset.
2476 """
2477 if isinstance(patient, gmCurrentPatient):
2478 return True
2479
2480 if isinstance(patient, cPatient):
2481 pat = patient
2482 elif isinstance(patient, cPerson):
2483 pat = pat.as_patient
2484 elif patient == -1:
2485 pat = patient
2486 else:
2487
2488 success, pk = gmTools.input2int(initial = patient, minval = 1)
2489 if not success:
2490 raise ValueError('<patient> must be either -1, >0, or a cPatient, cPerson or gmCurrentPatient instance, is: %s' % patient)
2491
2492 try:
2493 pat = cPatient(aPK_obj = pk)
2494 except:
2495 _log.exception('identity [%s] not found' % patient)
2496 return False
2497
2498
2499 try:
2500 gmCurrentPatient(patient = pat, forced_reload = forced_reload)
2501 except:
2502 _log.exception('error changing active patient to [%s]' % patient)
2503 return False
2504
2505 return True
2506
2507
2508
2509
2521
2522
2523 map_gender2mf = {
2524 'm': 'm',
2525 'f': 'f',
2526 'tf': 'f',
2527 'tm': 'm',
2528 'h': 'mf'
2529 }
2530
2531
2532
2533 map_gender2vcard = {
2534 'm': 'M',
2535 'f': 'F',
2536 'tf': 'F',
2537 'tm': 'M',
2538 'h': 'O',
2539 None: 'U'
2540 }
2541
2542
2543
2544 map_gender2symbol = {
2545 'm': '\u2642',
2546 'f': '\u2640',
2547 'tf': '\u26A5\u2640',
2548
2549 'tm': '\u26A5\u2642',
2550
2551 'h': '\u26A5',
2552
2553 None: '?\u26A5?'
2554 }
2555
2577
2600
2602 """Try getting the gender for the given first name."""
2603
2604 if firstnames is None:
2605 return None
2606
2607 rows, idx = gmPG2.run_ro_queries(queries = [{
2608 'cmd': "SELECT gender FROM dem.name_gender_map WHERE name ILIKE %(fn)s LIMIT 1",
2609 'args': {'fn': firstnames}
2610 }])
2611
2612 if len(rows) == 0:
2613 return None
2614
2615 return rows[0][0]
2616
2618 cmd = 'SELECT pk FROM dem.identity'
2619 rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd}], get_col_idx = False)
2620 return [ r[0] for r in rows ]
2621
2622
2624 return [ cPerson(aPK_obj = pk) for pk in pks ]
2625
2629
2633
2634
2635
2636
2637 if __name__ == '__main__':
2638
2639 if len(sys.argv) == 1:
2640 sys.exit()
2641
2642 if sys.argv[1] != 'test':
2643 sys.exit()
2644
2645 import datetime
2646
2647 gmI18N.activate_locale()
2648 gmI18N.install_domain()
2649 gmDateTime.init()
2650
2651
2672
2674 dto = cDTO_person()
2675 dto.firstnames = 'Sepp'
2676 dto.lastnames = 'Herberger'
2677 dto.gender = 'male'
2678 dto.dob = pyDT.datetime.now(tz=gmDateTime.gmCurrentLocalTimezone)
2679 print(dto)
2680
2681 print(dto['firstnames'])
2682 print(dto['lastnames'])
2683 print(dto['gender'])
2684 print(dto['dob'])
2685
2686 for key in dto.keys():
2687 print(key)
2688
2690
2691 print('\n\nCreating identity...')
2692 new_identity = create_identity(gender='m', dob='2005-01-01', lastnames='test lastnames', firstnames='test firstnames')
2693 print('Identity created: %s' % new_identity)
2694
2695 print('\nSetting title and gender...')
2696 new_identity['title'] = 'test title';
2697 new_identity['gender'] = 'f';
2698 new_identity.save_payload()
2699 print('Refetching identity from db: %s' % cPerson(aPK_obj=new_identity['pk_identity']))
2700
2701 print('\nGetting all names...')
2702 for a_name in new_identity.get_names():
2703 print(a_name)
2704 print('Active name: %s' % (new_identity.get_active_name()))
2705 print('Setting nickname...')
2706 new_identity.set_nickname(nickname='test nickname')
2707 print('Refetching all names...')
2708 for a_name in new_identity.get_names():
2709 print(a_name)
2710 print('Active name: %s' % (new_identity.get_active_name()))
2711
2712 print('\nIdentity occupations: %s' % new_identity['occupations'])
2713 print('Creating identity occupation...')
2714 new_identity.link_occupation('test occupation')
2715 print('Identity occupations: %s' % new_identity['occupations'])
2716
2717 print('\nIdentity addresses: %s' % new_identity.get_addresses())
2718 print('Creating identity address...')
2719
2720 new_identity.link_address (
2721 number = 'test 1234',
2722 street = 'test street',
2723 postcode = 'test postcode',
2724 urb = 'test urb',
2725 region_code = 'SN',
2726 country_code = 'DE'
2727 )
2728 print('Identity addresses: %s' % new_identity.get_addresses())
2729
2730 print('\nIdentity communications: %s' % new_identity.get_comm_channels())
2731 print('Creating identity communication...')
2732 new_identity.link_comm_channel('homephone', '1234566')
2733 print('Identity communications: %s' % new_identity.get_comm_channels())
2734
2740
2742 genders, idx = get_gender_list()
2743 print("\n\nRetrieving gender enum (tag, label, weight):")
2744 for gender in genders:
2745 print("%s, %s, %s" % (gender[idx['tag']], gender[idx['l10n_label']], gender[idx['sort_weight']]))
2746
2752
2756
2757
2761
2762
2770
2771
2775
2776
2780
2781
2788
2789
2790
2791
2792
2793
2794
2795
2796
2797
2798
2799
2800
2801
2802
2803
2804
2805 test_mecard()
2806
2807
2808
2809
2810
2811